The short answer, I'm afraid, is "no".
Sonic Visualiser allows you to change the playback speed yourself while playing a file, and can use the MATCH plugin to calculate alignments between files, but it doesn't have any capability to stretch one file to align with the other one during playback -- it simply plays file one or the other on its own, and when you switch the current file, it uses the alignment to switch to the "right" place.
I'm afraid I don't have any good suggestion to hand of a piece of software that might do this. It's technically possible, and there is sure to be something out there that does it... but I don't know what. I don't think it would make a simple extension to Sonic Visualiser, for various "architectural" reasons.
Chris